NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272421_1000565

Scaffold Ga0272421_1000565


Overview

Basic Information
Taxon OID3300031909 Open in IMG/M
Scaffold IDGa0272421_1000565 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25968
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (8.57%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035571Metagenome171Y
F041516Metagenome159Y
F058565Metagenome134Y
F075493Metagenome118Y
F102180Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0272421_100056519F075493N/AMQSVRAMHEYMLRRLMTSFAVTSQAIHVXNIFKVQISIQIYAFNSDVHCKNAFCFLKIIMHLYHLIAQMQSLCXDCVDICNAFSVLFSSLISLIFVILCYCDVITCXNHCEEENALFASXLYLCIFLNENIQKYYFLDDE
Ga0272421_100056520F035571GAGMTRLTLVKXARISLHACLISCVRSLTXLCNVILFCNMFRXTCNELMYVSVFKVSMLTLLNTSVTXRRVXFXSVSSLHSLLNSSSFLSCXCQTDASNANSDFTTAEYTYLAFVKITSHVKTSRXLSVNILVTXFIFICQRCASHCSFMSSCIFRICTCDFNLITEFSIYMLVIMSNLFDFLVKCVSSYFSDANVASXVQAHFMQTSCALLNVLQIFSVNLS
Ga0272421_100056525F058565N/AMMMNCSNVDSKMIASDVDSSQENRDARLKYLRNNEENVVNIIDLLIKISTLEKEKSKNHSXKEIALKLI
Ga0272421_100056528F102180GAGLTLVITHHDELKELVVKMKHLADVATANQEYHEKIYKIYSDSQISLKAMKVMISTKDQTR
Ga0272421_100056532F041516N/AMIQKVIYIHEAYNSSFRDHEIIHEKENLSNIKKTLHISKESILVKDFNLHHFT
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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