NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272421_1000789

Scaffold Ga0272421_1000789


Overview

Basic Information
Taxon OID3300031909 Open in IMG/M
Scaffold IDGa0272421_1000789 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20808
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (15.79%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008169Metagenome337Y
F057011Metagenome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0272421_100078915F008169N/AMFYEIXKTXSLVLDEETDXLYELNKQQEDEIKELKTRLQAKEITSSDFIYSERSRSQKISDSSLFTDEKNFTXKNXYKKIQNKLEINVDLFSNERVKLNYIHSRLFDDAAEIIQARRERDCVNLYRIIDDLLKELAQLFNDLNKKVNFHRKYYNLIQEFKKFNEFYTQFQCLSFYLDYHKKQLIADLKDKIHSCLQFIXVDQLVQSDSLKEIRFYLIHLNNDQRVIREIKNKIKRVNDFSKTIFHRATIVTQSVDHLKSDQLKSHDAILTSVKEADILVESCFICHKSDHSSKECLNQPTRINTVNNEYDCFDFDFDSNFDSKN
Ga0272421_10007899F057011N/ALCSQIEVLLKENYFEKSFLINASLISQSNSFSLRSLINSDFVVYMLIHDKLVNKVCQKLEIQFISLAKEKLIREYDEKLARKIITHKILFNLMIESHKKLTMLMLIADIKHHEAILSKFXMNKNEILLNIRHDTIVFFDQLNISISIFSISSNTKHSSXSXSTFIFSAAHSKIFKMLKHSVSFIQKESFLI
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Institute for Fundamental Biomedical Research
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