NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272421_1001088

Scaffold Ga0272421_1001088


Overview

Basic Information
Taxon OID3300031909 Open in IMG/M
Scaffold IDGa0272421_1001088 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16536
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (11.76%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005901Metagenome386Y
F061400Metagenome131Y
F074203Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0272421_100108814F005901AGAAGMNDKLIVNINQFNNEIICIVYMMSRLEDDAAKHIFAQRCFDSLNSFTSIYELFNHLKEIYDELNKNRKSRREYNALRQADKSFNVFYFDFMKLFSYLDYDDCTLMNNLQNKINNRLQNILSVCSENFTSLSRLKKFLQDVNNKQRVNYQLRSERRTVIVKVTVVSDKCATSLSVMTLIINYVKSIIFSISESDRAKSSIICYICKTSSHLFKNCSKNKIDISTSQAFILRLHKIVISKNKENEKMSSFENSEAKN
Ga0272421_100108816F074203N/AMFSRSCTEERFEEFRNRFFQISNADSSKSRTKSSSAASFIHEDDESFAETMILFMFYKIXKTRSLALDEETDXLYELNKQQEDEIKELKTRLQAKENTSSDFIYSERSRSQKISDSSLFTDEKNSTXKNXYGKIQDKLEINVDLFSNERVKLSYIHSRLFNDAAEITQARRERDYVNLYKIVDDLLKELAQLFDDLNKKVNFRRKYYNLIQEFKKFSEFYTQFQRLFFYLDYHEK
Ga0272421_10010884F061400N/AMLLKYYNRIMNLNSEKTIIEAXDIYRREKDEDNVIDEAADSFRADLQNVLHFIIV
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Institute for Fundamental Biomedical Research
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