NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272421_1001309

Scaffold Ga0272421_1001309


Overview

Basic Information
Taxon OID3300031909 Open in IMG/M
Scaffold IDGa0272421_1001309 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14711
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020121Metagenome225Y
F074204Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0272421_10013095F074204N/AMIVFCILRQAKSKVLTFALIDSEVSAYVFINKFFMQQHHFFLHQLTHSCRLQEFNNQVILINDIIHVVEITMILDEYIERLFFYVIELS
Ga0272421_10013098F020121GAGMKKLTEHLCDKMLIAQIIYEFNVNLFCRSCSKYFVEDEIXLNAHNLSIAYLTVKLNDHNVDFFKIKRVFKNNSLIIELNLSTFMKIHLIFHVILLSHIASDSFSSQRQESXELIIIKNDERFXYVNSILNFKHDRCYNSFLLKYYINXKNHFSTXKSFHLLNNCEQALNKYHLVIFVVKESHVLSCVIS
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