NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272421_1002993

Scaffold Ga0272421_1002993


Overview

Basic Information
Taxon OID3300031909 Open in IMG/M
Scaffold IDGa0272421_1002993 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9034
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (8.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008735Metagenome328Y
F009580Metagenome315Y
F038009Metagenome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0272421_10029935F008735N/AVSFLIYDKSXLNMNDFDLMKEIMIIIHIHALYQTLLSCIQLIFVFLIFKYVKKLLESRSNEDSDRVRRKMNDEKRLIVQDLCNDLSYRRKRLRIQLYINXRTENDEREXSDNIMLSNLILKLTHYTKDLDXIFDHTLSELFNSTLIVD
Ga0272421_10029937F009580AGCAGMIEVKMKRLRLVDKMICIQISEHDLAQRLNFSHEQRDFFIYTDDVTIVDIHDTQSEELLIXAFFSGFAXMLQLAVVAQLSLVADFLDLRNDQSLILNNDNDEA
Ga0272421_10029939F038009N/AMIKALSFQLDYVKLYKRSIELICLKNNRSSKERRILTLDFXXVFFLNDLKNTTRSFLFQTRDKIEXDLFLVNELNISXLLMSEREVILLLVSRXKTELLLASELRIELLLVSELKTELLLLSEXETRLLLASELRTELLLVNDL
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