NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306923_10082009

Scaffold Ga0306923_10082009


Overview

Basic Information
Taxon OID3300031910 Open in IMG/M
Scaffold IDGa0306923_10082009 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3615
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000257Metagenome / Metatranscriptome1447Y
F000853Metagenome / Metatranscriptome860Y

Sequences

Protein IDFamilyRBSSequence
Ga0306923_100820095F000257AGGAGGMTRRKREIAGLANERDFPHLVELALPPGPFRSVILEIDAFHRERRIPVRRGRSRHEAEQSYIRFCFPDTATADAFRNRFGGECLTHAPAKPKPRT
Ga0306923_100820096F000853AGGMNIPAEQPRGQTSLDKYGRGAESDCARAMAEIERVLRELALTRRSSPDRLGPADEASNAPSLVPAPSPIDRLVLDAGLDFVCHKDGMIELTEAGFRRMGQAHSAGLDTVIEVERRYLLRFPASPGR
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