NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0306923_10121521

Scaffold Ga0306923_10121521


Overview

Basic Information
Taxon OID3300031910 Open in IMG/M
Scaffold IDGa0306923_10121521 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2963
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000156Metagenome / Metatranscriptome1877Y
F016580Metagenome / Metatranscriptome246N

Sequences

Protein IDFamilyRBSSequence
Ga0306923_101215211F000156N/APVPPRLARNTIIESTFEVGRRFSCTMRVDCGQLDPGALIRPVPGEWHPRMPEHLDEEELADWCAGRNAVYQLAALTIGARLAVVDA
Ga0306923_101215212F016580AGGAGMLRDAHSVAKAVDMLDLLIEFFDDGEHWIKGKLDDGAGNRWLVGALRDIREGHNLHGAPTRAYLLKAMQRSPKTGWTGLISFNDRCRDFGELHEVILQARKLAVADIEKHQRAVPNLRTARGLAPATAPA

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.