NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306923_10434004

Scaffold Ga0306923_10434004


Overview

Basic Information
Taxon OID3300031910 Open in IMG/M
Scaffold IDGa0306923_10434004 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1492
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008645Metagenome330Y
F033145Metagenome / Metatranscriptome178Y

Sequences

Protein IDFamilyRBSSequence
Ga0306923_104340041F008645GAGMQYPNARIRSYQSGAAAMVAIFLLMAVTAATAKPCLTKEEARKLWPNEWLYWHTERHCWDHIKGTRGTYEERQPEPTQQAANIVPASPPKRVTTTKESRPEFFYPTMVFNKANILEMMPLTMKQPWLSLQSISGWPLLLDVDRRSFREWEKRIGTE
Ga0306923_104340044F033145N/AEIQRHSPVVKEEAQSKDVSPVVATAKADTKKIKHYKPKVFARQRNNYGYRNARGYAQYGYGGLFFR
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