NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307412_10674050

Scaffold Ga0307412_10674050


Overview

Basic Information
Taxon OID3300031911 Open in IMG/M
Scaffold IDGa0307412_10674050 Open in IMG/M
Source Dataset NameMaize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)885
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Maize Rhizosphere Microbial Communities From Greenhouse At Uc Davis, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.5Long. (o)-121.7Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023050Metagenome211Y
F095025Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0307412_106740501F095025GGAGMELRGKLRRLEDRAQVIAAQTQEDEKLERERAIMRMIVDEFARLKVSGELSDGDPLAQAVGNVVAAQYADLSEKSREYIAEGWIETLREWTRLDWMVKAGRNGAPHA
Ga0307412_106740502F023050GGAGMRSWIRRLERDARGHLESFELLDGSTYYYDRLETYKELFLHAYDVLLGDAHKWPEPPEILSKMCEARDVAAVLKRFKPEDPGRTFVNLAELYDTDALVRERRLVPLTHEPVEDVSNLETRKHGRGFQSQFPLSAPTTSSS
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