NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306921_10012366

Scaffold Ga0306921_10012366


Overview

Basic Information
Taxon OID3300031912 Open in IMG/M
Scaffold IDGa0306921_10012366 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9151
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (64.29%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006086Metagenome / Metatranscriptome382Y
F080730Metagenome114N

Sequences

Protein IDFamilyRBSSequence
Ga0306921_100123662F006086GAGGMTPDQLRGAARNLAYGLGIPVYIRDDRIYQNGPGLAFLPPNGDPPVTEVPLDQKEEANTANGSITIPKAIGLLLIMTETLWLSCQMLA
Ga0306921_100123664F080730N/AMYGSQLRTCGLGAVVAVLFGAGIGFGWHYFADSAGATAAASAVTPLAKSDAPSPTSPDPPSRPQGPFIDVPRFPDLSRASGVALDLSDEQKLALVALLTRTINDDRHPSSSRVRALKDILVKLDAKSPGQPYLAPNAYAPPDETRTRTPHRG
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