Basic Information | |
---|---|
Taxon OID | 3300031912 Open in IMG/M |
Scaffold ID | Ga0306921_10301226 Open in IMG/M |
Source Dataset Name | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 1877 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Puerto Rico: Rio Grande | |||||||
Coordinates | Lat. (o) | 18.321 | Long. (o) | -65.8172 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F010988 | Metagenome / Metatranscriptome | 296 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0306921_103012262 | F010988 | AGGAG | MNRLNRREFLSVLGGAGAVSMVSISAFASTSADKTASSVTSLYVKGLVMLDLGHPDFVRIGFPKAPGHKATLSIVPENGASRAIFIKGNGSVEMQGIAATDPKIFVPELVRFRELYGNGVASHIERCPSVISIPSNAIRSITTSEVSKERWTFVRAQSGEEVTSFRPRHVAETVKIDLSSASVLKLDQGKVNIPLDTTRELRMEYTPEKIEPGFDPYSDHFGHYFDYVERPAALDFDVVPKKLTGFSSPTPKVGQRFVDNAAAACFLIGCP |
⦗Top⦘ |