NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308175_100181605

Scaffold Ga0308175_100181605


Overview

Basic Information
Taxon OID3300031938 Open in IMG/M
Scaffold IDGa0308175_100181605 Open in IMG/M
Source Dataset NameSoil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2053
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Leaf Surface Microbial Communities From Various Plants In Uc Gill Tract Community Farm, Albany, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.8864Long. (o)-122.2981Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031990Metagenome / Metatranscriptome181Y
F099764Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0308175_1001816053F099764GGAGMARAKRNHHLSSKEMMQLTIWGGLLLVILLGLVYGLVRVGAIVPVGSGVERHAATASHENSPNSHP
Ga0308175_1001816054F031990GAGLRWAVLGLIFVLTASVNLFCVVIDNDDDGDPTTGLTIEFTAVQGKRIQVVANPVHLKSTVAFKVFRARFFHKQRVERSNELNTNSSFSNLIDLLGPPLRC

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