NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308175_101004638

Scaffold Ga0308175_101004638


Overview

Basic Information
Taxon OID3300031938 Open in IMG/M
Scaffold IDGa0308175_101004638 Open in IMG/M
Source Dataset NameSoil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)922
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Leaf Surface Microbial Communities From Various Plants In Uc Gill Tract Community Farm, Albany, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.8864Long. (o)-122.2981Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001698Metagenome / Metatranscriptome650Y
F006905Metagenome / Metatranscriptome362Y
F045282Metagenome / Metatranscriptome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0308175_1010046381F045282GGAVAGIHADIDALKGLHGALLRYRHAQRDVTARGEDQVRATRASLEEKASQLRAQLELSQGEYAGCRERAAQAGPDDLPVDC
Ga0308175_1010046382F001698AGGAGMSGVVNDIEALAEFRSHLMRFNHDLAENFSTIQSHWRELGEVWRDDMYRLFGEALEEVLPGITAYLEATEGHEAHLAALIERLGGYLETGAGAGLGVGRAEVRRAQGAGSGHGTERRGRNSR
Ga0308175_1010046383F006905N/AEQLRVISNTMPPAAIGDAISALRAVLREVPEEYPDRNREVNRFLPPLAAAIGALMKEQRVEIPYHSRVEHIATGGVAKYPDIVAMSLDELAAEFEGLCRRPGRDTT
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