NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308174_10157732

Scaffold Ga0308174_10157732


Overview

Basic Information
Taxon OID3300031939 Open in IMG/M
Scaffold IDGa0308174_10157732 Open in IMG/M
Source Dataset NameSoil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1695
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Leaf Surface Microbial Communities From Various Plants In Uc Gill Tract Community Farm, Albany, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.8864Long. (o)-122.2981Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005485Metagenome399Y
F005849Metagenome388Y

Sequences

Protein IDFamilyRBSSequence
Ga0308174_101577321F005849N/AGGLVAMRALLNRAKDFPAKQPHKIHRIVMFTPLTENVSLTGQADILKLLGRQSTDVAQMQANTSSKLVSVKEDLKALLAPQDPLAKARTEAFMKDVAEHIYIINAEGDKLVDVGPNGEKIVSDTVRMLSQLPTLGAPRLVTLRYSDIGGSEEDARERKSSVRNPAYAHSIVVKMGSQEDFSFFDHFEELLYDRIGTPPRNSAANLEQIRQSTQERIQDTIFEMNKFVVDKNPMVGLAWRNISDAVQAKFKDVPEPARTKQIEDLTRRTYYVYIFLSLYARMDDLRSRGILSPNDEMILGWKRSWLPNLMTSELGRWMLDSNLMEYYSEPMIKDLREAAGATGSSPTPPASTH
Ga0308174_101577322F005485N/AMKCPACCSEIDDRSYRCKECHRICSYGRLCRRYRYIVLVLVALIGFWTIKGYVRRWYANDYDKLPEGALVSDATTLDWLGLRDKGWYCEEPHYKGRLLHLRHKVFQAKDVIIFVHGFIGDYVHTWGKPNVLLDDPRFNRNYDFVFYGFKTALFGDVPAFDEEAARLDRMLTHLEEDYKSITIVTHSKGGLLAMRTLLNRAHEFP
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