NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308174_10337794

Scaffold Ga0308174_10337794


Overview

Basic Information
Taxon OID3300031939 Open in IMG/M
Scaffold IDGa0308174_10337794 Open in IMG/M
Source Dataset NameSoil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1198
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Leaf Surface Microbial Communities From Various Plants In Uc Gill Tract Community Farm, Albany, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.8864Long. (o)-122.2981Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001698Metagenome / Metatranscriptome650Y
F008441Metagenome / Metatranscriptome333Y
F045282Metagenome / Metatranscriptome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0308174_103377941F045282GGAVTGIHADIDALKGLHGALVRYRHAQRDVTARGEDQVRVTRASLEEKASQLRAQLELSQGEYAGCRERAAQAGPDDLPVD
Ga0308174_103377942F001698AGGAGMSGVVNDIEALAEFRSHLMRFNHDLAENFATIQSHWRELGEVWRDDMYRLFGEALEEVLPGITAYLEATEGHEAHLAALIERLGGYLETGAGAGLGVGRAEVRRAQGAGSANGTVRRDRNSR
Ga0308174_103377943F008441N/ALGTAPGPVPGPASIGPNDDGGERQAQLVDAYADAGLLWAKVVGSCLALAGALIEREDWDDVRALASFLASSGEETAAAELRLLLGNAIWQRHSEQLRVISNTMSPAAIGGAISALRAVLREVPEEYPDRNREVNRFLPPLAAAIGALMKEQRVEIPYHSRVEHIATGGVAKYPDIVAMSLDELAAEFEGLCRRTGRETT
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