NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310901_10168759

Scaffold Ga0310901_10168759


Overview

Basic Information
Taxon OID3300031940 Open in IMG/M
Scaffold IDGa0310901_10168759 Open in IMG/M
Source Dataset NameLab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)852
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Caldimonas → Caldimonas tepidiphila(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From West Virginia University Organic Research Farm, Morgantown, Wv, United States

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6475Long. (o)-79.9369Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012683Metagenome278Y
F013213Metagenome / Metatranscriptome273Y

Sequences

Protein IDFamilyRBSSequence
Ga0310901_101687591F012683N/ADSLRRAIVLIGDVSRVALLIDLSLPALLARVRAGDSVQPAWGRFTDRIAGYGLPTFPRVRHLRAPGPLATLVVAYRS
Ga0310901_101687592F013213N/AMKSWVLHRVAGRSDLPPRDSRHLHEPDLDVDAAPRHGDAGAAADPLRAGADLGVYAPLIGAVRDELEHFVASHVRLHVVIAERDRFLLTSIGVRSPGGADARELLQQFMHEFRPEQVKRYLAREVIGGLPNAAAIDLSQFAGLFDADAARVAEEEAEGGEYRELLEALRARPAAALPGYHVSVMGRWVELDAA
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