NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310884_10292083

Scaffold Ga0310884_10292083


Overview

Basic Information
Taxon OID3300031944 Open in IMG/M
Scaffold IDGa0310884_10292083 Open in IMG/M
Source Dataset NameLab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)906
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From West Virginia University Organic Research Farm, Morgantown, Wv, United States

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6475Long. (o)-79.9369Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013520Metagenome / Metatranscriptome270Y
F020740Metagenome222Y

Sequences

Protein IDFamilyRBSSequence
Ga0310884_102920831F020740N/AMRRAFARIYRGAVTVPAMRHDRLLFVLVPLYLMVVGALVIHKIWFREEAKPIAIENKAPVAKEDKAPAVNKADDAGSQTDESGGKRGLTPDCEKELRHTADLLRFFANRIQLGEETQSVVAD
Ga0310884_102920832F013520N/AMLARIMHPAETYRRRAERAERAFENAPTPEAKRLARNVAQRWREFADVAQRQETEGPPIPVHFGDASEAVHYAQDHKFALYWKGTPAFAKRQRELGDSFVARPVFTRKGATYVGLVPLDEEEKASEKEPS
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