Basic Information | |
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Taxon OID | 3300031944 Open in IMG/M |
Scaffold ID | Ga0310884_10508519 Open in IMG/M |
Source Dataset Name | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 708 |
Total Scaffold Genes | 1 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. SE220 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From West Virginia University Organic Research Farm, Morgantown, Wv, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: West Virginia | |||||||
Coordinates | Lat. (o) | 39.6475 | Long. (o) | -79.9369 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F057344 | Metagenome / Metatranscriptome | 136 | N |
Protein ID | Family | RBS | Sequence |
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Ga0310884_105085191 | F057344 | AGG | MTLKRALSVAACGPLFLALTACQPTAQSKGDSKSEFKDDSEAEFLVSSADKNGVPGFTPQGWGWKPGSRVEISLFNEPDGQGKANPSWKKILDETVDASSLFGLSSNPPFYPVRRTLCGNPAPRQFMLVMAKNMDTGKMRIRP |
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