NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310913_10322524

Scaffold Ga0310913_10322524


Overview

Basic Information
Taxon OID3300031945 Open in IMG/M
Scaffold IDGa0310913_10322524 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1091
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000427Metagenome / Metatranscriptome1151Y
F013806Metagenome268Y

Sequences

Protein IDFamilyRBSSequence
Ga0310913_103225241F000427AGGGGGMTMTNASSAVRGRRVKFTPQAMEKIKEFVAEGISRDEIANRLGVTVGSLQVTCSRLGISLRRIISANGSGRHTADVRLGSVSVAHVQEQKEVSHPAARVAPLTKFAITMRHRGKEQTTDILLSSPAIEVLALEAMSRDLSITALIGQVLVAVIDKDMIRKILPDEVPPSSA
Ga0310913_103225242F013806N/ASRQAAKIRELGQSLIDAGFVTLDQQSEALGLARSTTWTILRASHKGSGLSAAVINRMLLSPELPPLARRKILEYTTDKLAGVYGGSPTQRRRFFARLSIKQARRATPELGGTVNGQPVIVRVI
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