NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310913_10507530

Scaffold Ga0310913_10507530


Overview

Basic Information
Taxon OID3300031945 Open in IMG/M
Scaffold IDGa0310913_10507530 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)856
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000315Metagenome / Metatranscriptome1319Y
F010858Metagenome / Metatranscriptome298Y

Sequences

Protein IDFamilyRBSSequence
Ga0310913_105075301F010858N/ASDAETTALTKELDDITRNDRYPFSAPIRTLKAILAKLRPKPVREPSSPPKVYAPPKATAATRRRRG
Ga0310913_105075302F000315N/AMTLGNAATAKVRLIVWCKECRHQVEPDPAEMATRYGAETPVIDWRERLVCSQCGSRQTDMVLTGSQT

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