NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310910_10029027

Scaffold Ga0310910_10029027


Overview

Basic Information
Taxon OID3300031946 Open in IMG/M
Scaffold IDGa0310910_10029027 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3738
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006947Metagenome361Y
F022795Metagenome212Y

Sequences

Protein IDFamilyRBSSequence
Ga0310910_100290272F022795GAGGMAQASISLPQSTFDTFQPISASAVHVLARMAARKAVQDELRSQSVRVSLVKPSDISVRANEYLSQHPELYREALERAQRLKLYEKPRRRSVA
Ga0310910_100290279F006947N/AAMNFQSVRMRQPVASVTMDGDFAYFQVGCGRVTCRREGNRIVLIAGPDCQLAASGGLEMVTVAVSIKNDEKH

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