NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310910_10686918

Scaffold Ga0310910_10686918


Overview

Basic Information
Taxon OID3300031946 Open in IMG/M
Scaffold IDGa0310910_10686918 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)809
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000674Metagenome / Metatranscriptome941Y
F015755Metagenome252Y

Sequences

Protein IDFamilyRBSSequence
Ga0310910_106869181F000674GAGMNLRSSIAVTAAMLVAHPTAAQDHRFEADPVASVRENFVACEVLSQLRRVMDDPRFLLTGECEPLSAGRRVRIYARRGPYVCIYPEDTITPCKWTHE
Ga0310910_106869183F015755N/AEKPSEESAEWHWARAKSLRKNGFTKMAEEHEQIAQAIERRRQQAK

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