NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310909_10648951

Scaffold Ga0310909_10648951


Overview

Basic Information
Taxon OID3300031947 Open in IMG/M
Scaffold IDGa0310909_10648951 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)879
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003060Metagenome / Metatranscriptome510Y
F016580Metagenome / Metatranscriptome246N

Sequences

Protein IDFamilyRBSSequence
Ga0310909_106489511F003060N/AIRPEPGEWQPRMPKSLDADELADWRAGRNAVYQLAALTIGTRLAVADA
Ga0310909_106489512F016580N/AIMPRDAHSAARAVDMLDLLIEFFDDGDRWIKGKLDDGAGNRCLVGALRDIRDGHNLYGAPTRIYLLRAMQRSPKTGWTGLISFNDRCRDFAELREVILQARKLAVADIEKAPARRPDYRTARGLAPAAAPA

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