NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214473_10020195

Scaffold Ga0214473_10020195


Overview

Basic Information
Taxon OID3300031949 Open in IMG/M
Scaffold IDGa0214473_10020195 Open in IMG/M
Source Dataset NameSoil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7790
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil → Soil Microbial Communities From Uranium-Contaminated Sites Across The Upper Colorado River Basin Region

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)42.9888Long. (o)-108.3994Alt. (m)Depth (m)197
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000816Metagenome / Metatranscriptome879Y
F007803Metagenome / Metatranscriptome344Y
F015018Metagenome / Metatranscriptome258Y

Sequences

Protein IDFamilyRBSSequence
Ga0214473_1002019510F007803AGGAMACRSLLIAALLLVSADQALASWWIVRASDETCLVVDIEPTGNDKGVTKLGKDVYQTSAQAEADVKQLCKESKAQPKRDPGTAE
Ga0214473_100201953F015018GGAMTPAALVFVVCRALADQGPLDVNGFPLDGVKLDYGTCRNEVVQIYDRTEGLSTPQNPDLSHPNVCSRMSMMETANWEKHHPGWFVRLVKCPHPDGTFPGDTDV
Ga0214473_100201958F000816GGAGMSFVKGTQPNRMQKPRKRVLIGETREEEAARLEREIAAHPVTRCEPGKSGPSMSRPGWNNKSFIPVSERIVAEGIAKKMMRKTKGES
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