NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214473_10028536

Scaffold Ga0214473_10028536


Overview

Basic Information
Taxon OID3300031949 Open in IMG/M
Scaffold IDGa0214473_10028536 Open in IMG/M
Source Dataset NameSoil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6543
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil → Soil Microbial Communities From Uranium-Contaminated Sites Across The Upper Colorado River Basin Region

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)42.9888Long. (o)-108.3994Alt. (m)Depth (m)197
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011956Metagenome / Metatranscriptome285N
F013143Metagenome / Metatranscriptome274Y

Sequences

Protein IDFamilyRBSSequence
Ga0214473_100285361F013143AGGAGMLSRFLLGVIVGGIAVYVWGDEIRRFANIKGRTARLAASDTLQAVQSTAEEMFDSAKDQVTSTLQAGQDAIRPGRANRDRR
Ga0214473_100285367F011956AGCAGGMTPSVVTLQEVLRHHRSLSRRGREFYESLLAHGDVLAVRLDYLPGAMLWLVTTPKQARLMRKAREGRTTSDVCVMSLAEAQEMFTTMGDPTPTTLYEVAAWLLAPAPGDFSTPAPEEPEDPPSL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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