NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308417_1001462

Scaffold Ga0308417_1001462


Overview

Basic Information
Taxon OID3300031950 Open in IMG/M
Scaffold IDGa0308417_1001462 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS65
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16168
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (79.17%)
Novel Protein Genes13 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)11 (84.62%)
Associated Families13

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002970Metagenome / Metatranscriptome517N
F002982Metagenome / Metatranscriptome515Y
F004791Metagenome / Metatranscriptome423Y
F005302Metagenome / Metatranscriptome405Y
F005631Metagenome / Metatranscriptome394N
F006418Metagenome / Metatranscriptome373Y
F007976Metagenome / Metatranscriptome341Y
F010840Metagenome / Metatranscriptome298Y
F031016Metagenome / Metatranscriptome183Y
F039435Metagenome / Metatranscriptome163N
F048124Metagenome / Metatranscriptome148Y
F067304Metagenome / Metatranscriptome125Y
F075805Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0308417_10014621F039435AGGAGGMLVAITEPHQHFPVPLTVADYEFSTSDDGDERGRVTLPQGYARSGVMTQIGDELIVYCTQLSRTVWRGQIERIEEARDGSITWHAL
Ga0308417_100146212F005631GGAGMRVSVSVDLDNALRKLLPRSARIEAALDAGATAAHGMMQIYPPPPAGSRYRRTGNLRQKLRIKKPSKTSRIVENTASYARYVYGMPQARVHSGRWASVRDAAEAAKKEAIAVLKGR
Ga0308417_100146216F010840N/AMNLPFSQPLDKVTFGVLAAATVIILAWALREFAGIDLPAEVQSALAVIIGYVVSYHIPLTEAEAEAIARKYYKHK
Ga0308417_100146217F006418AGGAGMPKRRSTPTPRPVREIVIDSGDDFKIIFDRESKDYAVEYRGEPVGWRPTEAEARRLVEQLRYEDAKRA
Ga0308417_100146219F007976AGGAMPSTELSDFLRIAIDIQATPFPGIHIADGVAVATDGVMLVAKKFDVVFLRGEGAISPKAAKALAALAEETWIGSVAVVGNRVTVTARSTRYEENVGEVAGEYCEVKLPEFYCPRAPVARMLAVLTDESRGWVQIVENPRIKNVKEWSVKEFVALVSNPREGYELFRLKDIDDEHRYSVAQLRKGLRLFGKNSRLSVRRNAKGWLAFGDQWGYTFAVTPFVKHN
Ga0308417_100146220F002982AGGAGGMKIAFERTPTAICAVLTDAGECDRIINVDRASDAFRAFGIFARDVDPIAYKPLDALFALPRVVLVEIERREGGWCVEVVYWSKGSGTLAQYETEAPSLIVALTRALTDIDV
Ga0308417_100146221F075805AGGAGGMRVNVWHGWRGVHNGKDISRWEWIEFDGEPLGSLVVEIDEDRTDERVFYQTTDGRIVVAEHRYGDWEKGGVDYGVVSVYADLDDAARRGRRDDLVRIGAYDAPTLELDEWLSRYEEEE
Ga0308417_100146222F031016GGAGGMDTIRIWSGSRRVVCGEDYEFVKYEEFEGETLGSCWEEENSRGTQTTFYQTNDGRIVAHVVRWSRWENEATYAYIHVFPSLEGVNGAAAMFQWELENAGIIPPRTTSLDE
Ga0308417_100146223F048124AGGAGGMATISIWRGYRDWVAGSDYEVVTYEDAEEIGAVRFEDENGDIQYRIIRWYEGIVVFFVKREGHYCEAEIFEYPDLEAAAKDYAFILRKAGVI
Ga0308417_10014624F067304N/AMRCDQRLMPPLRAQRRKMLRDAPERLTVKRVGRAVVDVPAQHQFGIRSGQRREVEQT
Ga0308417_10014625F004791AGGAGGMDKPAEIYDIETIRVDRNALTIRDAASVLNNELTAPVVARLVRKAIGTQADRFPLRALKAVYERVLPQIFEPDAAIRARVEGMRPNVATITLGEYHQFLDASERRIAFPEVAAVILTKAYGEDILNEPYAAAALLLKKIFDSIGDEGNE
Ga0308417_10014626F005302AGGAGGMSHSGVLAGLYAGNYAVEISTDGTTWTAVSNATVKIDDVELSRPSGEAYVGGSSDYATVTVGKREPVELTLTFLYNEDTNSAANTIFDQFQSASPRLGVRWSPRGLVGSARAYGTSNDGGTSFGVGVITNVTLSALDPGDAEPYVAMVTVRTPSLRQYTLGSSPTNLNPA
Ga0308417_10014627F002970GGAGMSYSAVTDIIELLAGLAVQYNSAVVPVRRLSTQPNWSDAAQLPVRIIPALGGLRLVEGGVYTPTRATRAVWEIDDLLLVRDVGMGRGVADTATALVDYIEDYVARLRFAWLTRGDVQLLNVSGIVDVIRYGERAYEGVAMTTRFAHLVRAPSV
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