NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308417_1003201

Scaffold Ga0308417_1003201


Overview

Basic Information
Taxon OID3300031950 Open in IMG/M
Scaffold IDGa0308417_1003201 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS65
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10515
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (80.00%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F000855Metagenome / Metatranscriptome859Y
F002372Metagenome / Metatranscriptome566Y
F002795Metagenome / Metatranscriptome529Y
F002978Metagenome / Metatranscriptome516Y
F004024Metagenome / Metatranscriptome456N
F007172Metagenome / Metatranscriptome356Y

Sequences

Protein IDFamilyRBSSequence
Ga0308417_100320111F002372AGGGGGMPTRREDTLWSVVHQRSMHLRALLDGLDDIDVGVTYELDYYPYAIVELLRVREDAPPLVLRSAYVQANRQWERHSEFTLRVVEAALQLVEWYRADPSMGGAEGV
Ga0308417_100320112F002795AGGAGGMPVTTGLALHGVVASYREFVSRKNGKLYRIVTVFGNLVIDETVLCAVDGYDVFVDSAGYARGEMVSFPARLQFARDGSGRPVIKLYVDEGVR
Ga0308417_100320115F004024AGGAGGMHSERDYLRQPSLNDDDMMFLDARATLAAALSRAVVGYSDGRVRALAWLSIATPRLYDRIAPIIESSAIRQSPGASRTLRDALRALSLEEYVRRRDERRSDR
Ga0308417_100320116F002978AGGMSSVRDWRVTIVPWADRRLWFIQARRGRRVVWGVVYDAGDPDSVALARRAIATLRAAGADCSALPAVLPGASPGA
Ga0308417_10032013F000642GAGGVQEISIALALCAVGAAVWYMRRREAGAGRVTGWLLLYDDLGGWRVLPASYGDAGIVADGVTYPASLPALRVGRELVWIARCDAAALIEHQALERAREAAALASLWRGGGQWLDLLRVLGVVLPAAFAYFTWAQVAALQALVAQILALVGDK
Ga0308417_10032015F000855GAGGVEWLEDFFSKIVSWVDELSASIHNGIIGWVNSLIDIWNGWMDALLHPAQAMPSIPQLRWVVDWLGGIADYTRLMYMLVDYVAYAGIVQQALTAQIGIVIVGLGFRAWLVIRRVVLVS
Ga0308417_10032019F007172AGGAGGMTTPTALTTLQRRAFAAALRAAKRDAYCRAVGGFVIAHLSDGTIDWFPAGQPPHQGGEPDRRATIIGKWRWNHRRWSRIA
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