NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308417_1004861

Scaffold Ga0308417_1004861


Overview

Basic Information
Taxon OID3300031950 Open in IMG/M
Scaffold IDGa0308417_1004861 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS65
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8221
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (92.86%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000855Metagenome / Metatranscriptome859Y
F001381Metagenome / Metatranscriptome709Y
F002229Metagenome / Metatranscriptome580Y
F002978Metagenome / Metatranscriptome516Y
F066811Metagenome / Metatranscriptome126N

Sequences

Protein IDFamilyRBSSequence
Ga0308417_10048611F002978GAGMSVRDWRVTLKPWADQRLWFIQARCGGRVVWGVVYDAGDPESVSLARRAVATLRAAGADCSSLPAVLPGAPPGAPGA
Ga0308417_100486114F002229GGAGGMVTLLTLDGVEDVDYTPSDAEIRASLDDAGLYGMVLNGVTWMRLVSGAGWWTVVCNRRVTATLATIGWCWVADGLGARGYWSPALACVPAEVRSMCGGCVDEDEEAGNGG
Ga0308417_10048613F001381GAGMQYVIATLYVLVWLALAAGAALVLPRWALPAVLVQLAVAYVMLRAFWLTVARDD
Ga0308417_10048614F000855AGGAGMDWLEDFWSKVVGWWDQVSAGVHNGVIGWINSLVEIWNGWMDALLHPARAMPSIPALRWIVDWLGDIADYTRLMYMLVDYVAYASIVQQALLAQLAIVVVGLGFRAWLVIRRIVLVS
Ga0308417_10048616F066811AGGAGGMQFNNPPSFTAPSMNDILNAATSIFNPFVGVLALAIGVTLGARMLGRIVNLF
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