NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0308417_1005324

Scaffold Ga0308417_1005324


Overview

Basic Information
Taxon OID3300031950 Open in IMG/M
Scaffold IDGa0308417_1005324 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS65
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7811
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (83.33%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)9 (100.00%)
Associated Families9

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F000855Metagenome / Metatranscriptome859Y
F001381Metagenome / Metatranscriptome709Y
F002229Metagenome / Metatranscriptome580Y
F002372Metagenome / Metatranscriptome566Y
F002795Metagenome / Metatranscriptome529Y
F002978Metagenome / Metatranscriptome516Y
F004024Metagenome / Metatranscriptome456N
F015735Metagenome / Metatranscriptome252Y

Sequences

Protein IDFamilyRBSSequence
Ga0308417_100532410F002978AGGVSDLRDWRVTVVPWADRRLWFVQARRGRRVVWGVVYDADDPDSVALARRAIATLRAAGADCSALPSPLPGSPAPGA
Ga0308417_100532411F000642AGGTGGVQEISIALAICAVGAAVWYMRRRDAGAGRVRGWLLLHDDLGGWRVLPAVYGDSGIVADGVTYPASLPSVRAGRELVWIARCDAAALIEHQALERAREAAALASLWRGGGQWLDLMRVLGAVLPAVFAYFTWAQVSALQALVAQILALVGER
Ga0308417_100532412F001381GAGMQYVIATLYVLCWLALAALAALWLPIWALPVVLVQLAVAYVMLRSWLTAAAGGDDGA
Ga0308417_100532413F000855GAGGMDWLEDAISKIVSWLDQISAAVHNAIIGWINDSLIATWNGWMDSLLHPAQAMPSVPALRWIVDWLGGIVDYTRLMYMLVDYVAYAWIVQQALTAQIGIVIVGLGFRAWLVIRRIVLVS
Ga0308417_10053242F015735AGGCGGMVWHYWSVEWHPRDDPPHGLPRVVCVARRAVSDPWSGPGPFPPDIDRAVRFWNLVASGGARDHGVGYEVVWRLSVVADDADGDAPPDGVWSDDPEYVARRRLLRWIMRRQCPLVADHFAAEHFRSCPAYFGLEPGA
Ga0308417_10053243F002372AGGGGGMPTRREDRLWSVVHQRSAHLRALLDGLDGVDIGVTYELDYYPYAVVELLRVREDAPPLVLRSVYIQSNRQWEYHSEYTLRVVEAALRLVEEYRADPSMGGAEAVWA
Ga0308417_10053244F002795AGGAGGMPVTTGLVLRGLIAAYREFVSRKDGKTYRIVTVYGDLVAGEDVLCAVDGYDVFVDTPGYARGEMVSFPARLQFARDGSGKPIVRLYVYEGVR
Ga0308417_10053245F002229GGAGGMVTLLTLDGVEDVDYVPSDEEIRASLDDAGLYGMVLGGVTWMRLVSGAGWWTIIGGRRITATLAAVGWCWVADGLGARGYWSPALACVPAEVRAMCGGCVQDEDEED
Ga0308417_10053247F004024AGGAMPSERDYLRQPLNDDDMMFLDARATLAAALSRAVVGYSDGRVRALAWLSIATPRLYDRIAPIIESAALRQSPGASRTLRDALRALSLEEYVRRRDERRSER
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.