NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308417_1006606

Scaffold Ga0308417_1006606


Overview

Basic Information
Taxon OID3300031950 Open in IMG/M
Scaffold IDGa0308417_1006606 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS65
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6859
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Associated Families8

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F000855Metagenome / Metatranscriptome859Y
F001381Metagenome / Metatranscriptome709Y
F002229Metagenome / Metatranscriptome580Y
F002372Metagenome / Metatranscriptome566Y
F002795Metagenome / Metatranscriptome529Y
F002978Metagenome / Metatranscriptome516Y
F004024Metagenome / Metatranscriptome456N

Sequences

Protein IDFamilyRBSSequence
Ga0308417_100660610F002372AGGAGMPTRREDALWHVVHLRASHLRALLDGLDDVDVSIAYELHYYPYAIVELLRVREDAPPLVLRSLYVQANRQWEYHSEFALRVVEAALQLVREYRADPSLGGAEAVFV
Ga0308417_10066062F000855GAGGVDWLEDFFSKIVSWVDELSASVHNAIIGWINDSLIAVWNGWMDSLLHPAQTMPSSPALRWIVDWLGGIADYTRLMYMLVDYVAYAWIVQQALTAQIGIVIVGLGFRAWLVIRRVVLVS
Ga0308417_10066063F001381GAGMQYVIATLYVLLWFSLAALATLVLPLWALPAALVQLAVAYVMVRSWLTAAVGGDDGA
Ga0308417_10066064F000642AGGAGVLALCAVGAAVWYMRRRDVGAGRVRGWLLVYDDLGGWRALPAAYADSGVVADGVTYPASLPVVRVDRTLVWIARCDAAALIEHQALERAREAAALASLWRGGGQWLDLLRVLGVVLPAVFAYFTWAQVSALQSLVAQILALVGER
Ga0308417_10066065F002978GAGGVSVRDWRVTIVPWADRRLWFIQARRGRRVVWGVVYDAGDPESVSLARRAIATLRAAGADCSALPSPLPGVGREP
Ga0308417_10066066F004024AGGAMRSERDYVRQPSLNDDDMMFLDARATLAAALSRAVVGYSDSRVRALAWLAVATPRLYDRVAPIVESSAIRQSPGASRTLRDALRALSLEEYVRRRDERRSDR
Ga0308417_10066068F002229GGAGGMVTLLTADGVEEVDYTPSDAEIRASLDDPGLYGMVLGGVTWMRLISVPGWWTVLFGKRLIVTLAPAGWCWVMDGFGRGYWSHALSAVVADVCAMYGGFIED
Ga0308417_10066069F002795GGAGGMATNDGLVLRGMVAAYREFVARKDGKLYRVATVFGDLVSGETILCAVDGYDVFVDSPYARGEMVELPARLQFVRDASGRPVVRLYVDEGVR
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