NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308417_1006800

Scaffold Ga0308417_1006800


Overview

Basic Information
Taxon OID3300031950 Open in IMG/M
Scaffold IDGa0308417_1006800 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS65
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6740
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Thermofonsia Clade 3 bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004791Metagenome / Metatranscriptome423Y
F005302Metagenome / Metatranscriptome405Y
F012577Metagenome / Metatranscriptome279Y
F037517Metagenome / Metatranscriptome167Y
F056643Metagenome / Metatranscriptome137N

Sequences

Protein IDFamilyRBSSequence
Ga0308417_10068002F012577AGGAGMLVAIAKPHQQFPVPLTVADYEFSTSDDGDERGRVTLPPTYARSGVMTQIGDELIVYCTQLSKTIWRGQIERIEEARDGSITWHALGFGALQRDARISVVRNMTDMKKWKPVGEGVITNSGYDSRGDLWEYEYVASGGNIVVQIRTKKAFTISNTTLFFLTYLFDQPQRYIKLENNERIFVHQVTSTGLADGVWVAPVTVIIQASIYQLLLGAFTGLSTGGNLTAPNSFGWVIGVRASGNETTAGTTSVLFRAEINDLQFGSIDAEKLTIALNERGGCCTIHLPSASSVSLAKPDANLRDIIENADGNVVRYHRKRFLRDRPKTVIDLREDSTLVWRFPETTRVVDISKAPNSIYGQYPGYWVDYLTATTTIQSLETRRHLAKRFASVGEYDTKTIADTRRNETAVALDRQIAPLMIELDNSRYELMMREGFTVPNWAADVSDYAIVPGYYRNAKITARVVSRERTAYTVSFTPDDFVTALR
Ga0308417_10068003F037517GGAGGMRIRQIGTIVFNADTNIVVDATNQDAPGIGFRVNDLYDPQPFAVEIAFRRATRQDALGAVNALARELHSYAQRRQDGRYAIAGGALVVAEDATGGATLRSYLRDGSVTLLGVEATATGVIARVRVTGTLVAPFLDYTSTTNTISSLLQYERRIVSLSGLNDAYLYKHSFEVFTSNMFDIYNALLAVEELESATGTSRITVINQFSAAGNGVVTVEDWDAGWQTLKRVELTTATNGVISYLIPPTIPQDVYRLFIEIFCFTPPGPNARYIVSWDGQPQIAETIVEDRSWYSPALFVRREGTTTLTLQIQNVPIWTLVMPLVLIPTDGVFVWSAITPPTLNSFRIRDLQSATARPFSTIPNGTVYGPPGCVSSRHIAIFNGMMDFWLNASSSANLNIYSRRIEPAAFA
Ga0308417_10068007F004791AGGAGGMDKPAEIYDIEAIRVDRNALTIREAASVLNNELTAPVVARLVRKAIGDQADRFPLRALKAVYERVLPQIFEPDEAVRSRVAGLVPAVGEITLGEYHEFLDASERKIAFPPVAATLLIKAYGEEILNEPYAAAVLLLKKIFDSIGDEGNE
Ga0308417_10068008F005302AGGAGGMSHSGVLAGLYAGNFAVEISTNNTTWTAVSNANVKIDDVELNRPSGEAFVGGSSDYATITVGKREPVEITLTFLYNEDTNSAANTIFDQFQSTSPRLGVRWSPRGLVSQARAYATSNDGGTTTGLGVITNVTLSALDPNDADPYVAMVTVRTPSLRRYTLGNSPTDLS
Ga0308417_10068009F056643N/AGVYTPTRATRAVWEIDDLLLVRDVGMGRGVADTATALVDYIEDYVARLRFAWLTRGDVQLLNVNGIVDVVRYGERAYEGVVMTTRFAHLIRAPSA
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