NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308417_1006801

Scaffold Ga0308417_1006801


Overview

Basic Information
Taxon OID3300031950 Open in IMG/M
Scaffold IDGa0308417_1006801 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS65
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6740
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (58.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029920Metagenome187Y
F029994Metagenome / Metatranscriptome186Y
F031690Metagenome / Metatranscriptome182Y
F040491Metagenome / Metatranscriptome161N

Sequences

Protein IDFamilyRBSSequence
Ga0308417_100680110F031690AGGAGMNHNHYPQNLLYCASFDAVVGTEHCRLYMLVSNAEQAAKYMWPTKTRRKTRYVVSCERLAGLQYSDEIEAVAHRYGFQHNHPHICDVMEDHKSLASVIVETNALRWALSFLPDDGVKTLTINDKGLNVQGVPLGGIALYSAEMLVRSRPLRLAFEQMPHDETAHVDILGHRNARALKISLGTEAHYVFDYRNGFTAFIPRGEER
Ga0308417_100680111F029920N/AMISMSDLERAFREERPLKGFIAPGLALSYQPREHLVIGRADRQPDADDIALVIELAREASIIIACEPQHEVIKLNGITWHLARWSLKREYVADHLPQRKMERRDR
Ga0308417_10068013F040491AGGMDIVQVQTFLRYIAELPEVQFIAASVLVNTALAVAASIRNDDFHLPALANFLWRHLLPYVVAYASIRIAADELGLQAVATATWLIIEASLLGRVAASLHELGIPMPDSLAKLLRKDH
Ga0308417_10068016F029994GGAGGMSVSFLGCRDDIPVVPGRPLLLVRCRQCGYTTVARSPGAATLRGWQLPERWPYHAPQLGATVEGVCYSCVSKARRRPGERGL
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