NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308417_1007074

Scaffold Ga0308417_1007074


Overview

Basic Information
Taxon OID3300031950 Open in IMG/M
Scaffold IDGa0308417_1007074 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS65
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6589
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004307Metagenome / Metatranscriptome444Y
F005028Metagenome / Metatranscriptome414Y
F008499Metagenome / Metatranscriptome332Y
F018115Metagenome / Metatranscriptome236Y
F032180Metagenome / Metatranscriptome180Y
F044842Metagenome / Metatranscriptome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0308417_10070742F044842AGGAGGVEEIELWCGVRGNTFRSTHLVRFIGEYLGIINVAHAEDNWVERCVLYRTEDGRVVVHQLRLSLLDDGIDIAEAYVLPALGAGEGERGE
Ga0308417_10070745F032180AGGAMWWKIEEIPEQELEDWTKAVGRFERAAKRDVAVRAAGAFVIYDLNGVLGYVAGCEAPDGAYLVERWVRGKKGWTLYE
Ga0308417_10070746F005028AGGAGMCDDDLRNDDLRAAMSFFAARLRGAELDETRLLRWTRHKLRSDAQAVAELMLTVGYRPTYIRYFLRYHIPALNESAAVGETYTDLDAADAHLGLCWRLDEDVLTVYTDLHRAAKRLRQPYRDLAAVCLRWGYVHETVVQMLAKALERKHRNVVED
Ga0308417_10070747F018115AGGAGMNDAEERFVRRYEHLPPDAPLDRHAARALLRRALADREAPAEYLLEHECAPSLLGEFINRHRNDALSDAARGASLRLASRTLRAPDCLEERDRWAVLEWIQRGVVPSARILRRLCEEIDD
Ga0308417_10070748F008499GGAMKTFRSKSEPRWKRKEREAVKALQATFGRVSDPSLARLLTPTGRVGHLTRFGVDGFVGDNPGFAVEVKARRKMLTKPTLDALLQTIDRAARFERIPLFVLVFGDDVPTRTENGARVDREWVMMPRRVLDELVGKERKDE
Ga0308417_10070749F004307AGGAMFKELISNSGNGRERPELNGAYIGRFLGVKERQRPTFETRNAPEPVMEDVFVFEFDIEDDDGQPVRVSKWVRKPTRLTHPSKNGKVTNLYRVLAALYGVAQMTDAQLERAEEFVENEAIGREYQLTLETKPSGWVEIVHIAPARRTRQRKTKEDEDVPF
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