NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308417_1007240

Scaffold Ga0308417_1007240


Overview

Basic Information
Taxon OID3300031950 Open in IMG/M
Scaffold IDGa0308417_1007240 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS65
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6506
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F000855Metagenome / Metatranscriptome859Y
F001381Metagenome / Metatranscriptome709Y
F002978Metagenome / Metatranscriptome516Y
F004024Metagenome / Metatranscriptome456N
F007172Metagenome / Metatranscriptome356Y
F012676Metagenome / Metatranscriptome278Y

Sequences

Protein IDFamilyRBSSequence
Ga0308417_100724013F007172AGGAGGMTTPTTLTALQRRAFAAALRAAKQDAYCRQVGGFAIACLSDGSIDWFPLGQPPHRGGEPDRNAVILGKWRWNHRRWSRIA
Ga0308417_100724014F012676GAGGMNSIKIAAGWDGNPKSITSPEHNWIRFLEAQGIAYAAYLDEPAGWRLVVCDERRFTRALHALRKYGVYGICEWTYDIHP
Ga0308417_10072402F004024AGGAMPSERDYLRQPSSLNDDDMMFLDARATLAAALSRAVVGYSDGRVRALAWLSIATPRLYERIAPIIEASAIRQSPGASRTLRDALRALSLEEFVRRRDERRER
Ga0308417_10072405F002978GAGMSVRDWRVMLVPWADRRLWFIQARRGRRVVWGVVYDAADPDSVALARRAVATLRTAGADCSALPHPLPGAPGA
Ga0308417_10072406F000642GAGGVQEISVALAICAVAAAVWYMRRREAGAGRVRGWLLLYDDVGGWRALLAAYGDSGIVADGVTYPASLPAVRVDRTLIWIARCDAAALIEHQALERARESAALASLWRGGGQWIDFLRVAGVVLPAAFAYFTWAQVSALQALVAQILALVGER
Ga0308417_10072407F001381GAGMQYVIATLYVFLWFALAALAALWLPRWALPAALVQLAVAYVMLRAVWLTAAGGDDGA
Ga0308417_10072408F000855GAGGMDWLEDLWSKIVGWWDQISAGVHNGVVGWVNSLVEIWNGWMDSLLHPARAMPSIPALRWVVDWLGDIADYTRLMYMLVDYVAYAGIVQQALTAQIGIVIVGLGFRAWLVIRRVVLVS
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