NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308417_1007634

Scaffold Ga0308417_1007634


Overview

Basic Information
Taxon OID3300031950 Open in IMG/M
Scaffold IDGa0308417_1007634 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS65
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6293
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004307Metagenome / Metatranscriptome444Y
F005028Metagenome / Metatranscriptome414Y
F008499Metagenome / Metatranscriptome332Y
F025895Metagenome / Metatranscriptome199Y
F044842Metagenome / Metatranscriptome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0308417_10076343F004307AGGAMFKELISNGKHSERPELNGAYVGRFMGVKERQRATFETRLSPEPELEDVFVFEFEIEDDEFDAPIRVSKWVRKPVKLTHPSKSGKSTNLYKVLAALYGVALMTDEQLDNAEEFVETEALGRQYQLTLETKPSGWVEIVHIAPVRRARRKENQDDDLLF
Ga0308417_10076344F008499AGGAMTSCSKEPRWKRKERDAIKALQAIFGRVSDPSLARLLTSTGRVGHLTRFGVDGFVGNDPGFAVEVKARKKMLTKQTIEALLQTIDRAARFDRIPLFVLVFGDDVPTRTENGARVEREWVMMPRRVLEEIVGKERKDEGITDA
Ga0308417_10076345F005028GAGGMRDDELHAAMAFFAARLRGAEVTEAGLRRWTRHKLRNDAQAVAELMLTVGYRPTYIRYFLRYHIRAVDPEGDSEDVTLAVADLHAAAKRLRQPYRDLAAVCLRWGYVHETVVQMLAKVLERK
Ga0308417_10076346F025895AGGAMSDLIAWLVAGGVILALVNSNIADGLLNALDLSDNLKRAVDWARGVRGVPAGVASVCFFILAYVFGALAYRYDLVPTWRFIQPIAADVLATGAEWLTLFTLFVTLLPTLIELATVGLMQRDIKALQWMLYFFVFFDIVTDYREAVELVEVWQRGELFAPLPGALQGTTMVLAKVGWTFAASFAFEFLAILFAVTALLLAANVRATGGGGR
Ga0308417_10076348F044842AGGAGGMEKIELWCGVRGKSTRRVRFVGEYLDYVDIRRADDWVELAALYRTEDGSVVVHQMRLSVVNDGIDVAEAHIIPALDAGEQQLSQHLIEIKEE
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