NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308417_1009616

Scaffold Ga0308417_1009616


Overview

Basic Information
Taxon OID3300031950 Open in IMG/M
Scaffold IDGa0308417_1009616 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS65
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5454
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (92.31%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F000855Metagenome / Metatranscriptome859Y
F001381Metagenome / Metatranscriptome709Y
F002229Metagenome / Metatranscriptome580Y
F002372Metagenome / Metatranscriptome566Y
F002978Metagenome / Metatranscriptome516Y

Sequences

Protein IDFamilyRBSSequence
Ga0308417_10096161F000855N/AFSKVVSWFDERAASIYNGIVAFINLLVEIWNGWMDALLHPARAMPSVPALRWIVDWLGGIVDYTRLMYMLVDYVAYASIVQQALLAQLTIVTIGLAFRAWLVIRRIVLVS
Ga0308417_100961611F002372AGGGGGMPTRREDALWSVVHRRSSHLRALLDALDDVDMSIAYELHYYPYAVVELLRVRDDAPPIVLRSAYVSANRQWERHSEFTLRVVEAALQLVHEYRADPSAGGSDSWV
Ga0308417_10096162F001381GAGMQYVIATLYVLLWLSLAAVAALVLPLWALPATLVQLAVAYVMVRAVWLTVARDD
Ga0308417_10096163F000642GAGGVQEISIALAICAVGAAIWYMRRREVSGRVHGWLVLYDDLGGWRALPAVYGDAGVVADGVTYPASLPSVRVGRELIWIARCDAAALIDHQALERAREAAALASLWRGGGQWIDFLRVAGVVLPAAFAYFTWAQVAGLQALVAQILALVGER
Ga0308417_10096164F002978GAGMSVRDWRVTLKPWADRRLWFVQARCGGRVVWGVVYDAGDPDSVALARRAIATLRAAGADCSALPSPLPGSPAPGA
Ga0308417_10096168F002229GGAGGMVTLLTLDGVEDVDYTPSDAEVRASLDDSGLYGMVLGGVTWMRLTSGVGWWTVIGGRRVTATLAAIGWCWVADGCGARGYWSPALACVPAEVRVMCGGCGGCVDDDDGGDEE
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