NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308417_1011764

Scaffold Ga0308417_1011764


Overview

Basic Information
Taxon OID3300031950 Open in IMG/M
Scaffold IDGa0308417_1011764 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS65
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4798
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F000855Metagenome / Metatranscriptome859Y
F001381Metagenome / Metatranscriptome709Y
F007172Metagenome / Metatranscriptome356Y
F066811Metagenome / Metatranscriptome126N

Sequences

Protein IDFamilyRBSSequence
Ga0308417_10117641F000642AGGAGMQEMSVALALCAVGAAIWYMRRREAGAGRVRGWLLLHDDLGGWRVLPAVYGDAGVVADGVTYPASLPSVRAGRELIWVARCDAAALIEHQALERAREAAALASLWRGGGQWIDFLRVAGVVLPAAFAYF
Ga0308417_10117642F001381GAGMHYVVATLYVLLWLALAALAALWLPRWALPAALVQLAVAYVMLRAVWLTAAGGDDGA
Ga0308417_10117643F000855N/AMDWLEDFFSKVVSWFDERAASIYNAVVAFINVLVDIWNGWMDALLHPAQAMPSVPALRWVVDWLGDIADYTRLMYMLVDYVAYAQIVQQALAAQLTIVTIGLAFRAWLVIRRVVLVS
Ga0308417_10117645F066811GGAGGMEFNNQPQFNAPSMTDILNAATSIFNPFVGVLALAIGVTLGARMLGRIVNLF
Ga0308417_10117648F007172AGGAGGMTTPTALTALQRRAFAAALRAAKNNDYCRAVGGFVIVCMSDGTIDWFPLGQPPHRGGEPDRRATILGKWRWNHKRWSRIA
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