NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308417_1020919

Scaffold Ga0308417_1020919


Overview

Basic Information
Taxon OID3300031950 Open in IMG/M
Scaffold IDGa0308417_1020919 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS65
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3255
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002982Metagenome / Metatranscriptome515Y
F048124Metagenome / Metatranscriptome148Y
F075805Metagenome / Metatranscriptome118Y
F087842Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0308417_10209191F087842AGAAGGMVTIWGGYVATDEARVYLITFDGERIGGVDERNAQKTFYSTADGRVVVHEVRIGRRRGGRTYDQALVYVFDDLAQACMHLTVNPQHIAQTR
Ga0308417_10209192F002982GAGGMKIAFERTPTAICAVLYETGECDRIITVARPSDAIDALALDIHTAALKPLDTLFALPRVVCVEIEQRSGGWCVEVAYWHKGLGTLAQYEEDAATLSEALARCVWALAR
Ga0308417_10209193F075805AGGAGGMRIRVWHGWRAVHNGVDVSRFEWLEFDGELLGTLVVEIDEDRTDERAFYLLYDGRLVVAEHRYGDWEKGGVDYGVVSVYGSIEDAARRGRRDDLVRVGAYDAPTRELDEWLSQYEEEE
Ga0308417_10209195F048124AGGAMATISIWRGYRDWVAGSDYEIVTYEDARELGAVRFNDEEADIQYRIIEWDEGIVVFFVERKGHYVEAEIYEYPDLETATKDYAFILRKAGVI
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