NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308417_1021396

Scaffold Ga0308417_1021396


Overview

Basic Information
Taxon OID3300031950 Open in IMG/M
Scaffold IDGa0308417_1021396 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS65
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3203
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025895Metagenome / Metatranscriptome199Y
F044842Metagenome / Metatranscriptome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0308417_10213962F044842AGGAGMEEIELWCGIRGNTFRSTQCVRFVGEYLAVVDVAHAEDWVERCVLYRTEDGRVAVHQLRLSLLDDGIDVAEAYILPALDAGAGEGGVLCER
Ga0308417_10213964F025895N/AVIFALVNSNAADGLLSALDLSDNLKRAVDWARGVRGVPAGVAAVCFFILAYVFGALAYRYDLVPTWRFIQPIANDVLSTGAEWLTLFALFLTLLPTLIELATVGLVQRDIKALQWMVYFFIFFDIVTDFGEAVALVEVWQRGGLFAPLPDALEGAAAVLAKVGWTFAASFAFEFLAILCAVTALLLAANVRAPGGGGGGR
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