NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308417_1021507

Scaffold Ga0308417_1021507


Overview

Basic Information
Taxon OID3300031950 Open in IMG/M
Scaffold IDGa0308417_1021507 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS65
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3193
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029452Metagenome / Metatranscriptome188Y
F033055Metagenome / Metatranscriptome178Y
F050402Metagenome / Metatranscriptome145Y
F092114Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0308417_10215071F092114N/AMRELLSITRHKMEQLLGDNPPKRDTWLIKCRRLREIVSNLPSNQIITTSIPEGHSNLLLINITIKAHAMMQLLRGTVVDFGDDTELYQTEFNKFLASNELALREAILQRLVYGLGAVCVVGDKQHGWRLQSISPNDLWWDCTTGDVMQPKWIARGYRDSDSNDYREVWYADVYHRYKVGSTDVDTHTNPYGVIPIVLFPAQYIPDTIYPIGDVELACPQQFILDEIRRTYLNMARRGAGFFSVKRSSIDETELQRLQNPDEVYVLVNEQDAIMPIPTPAPNPEWQ
Ga0308417_10215072F029452GGGGGMIYEYRCAECGWLTVASRTVEQRDIAPRCERCGKLTKRVYPPRAQIIVPRAFSLECAREAAELVLPQNDVEKQYWDTFGIMDSDGDGE
Ga0308417_10215073F033055GAGMMVYPDQVITNLNWTDNTNQDILLALAEGDGMYIYNTEPENLLHLGMPSEVVNCQVGVRGTGSFFNPPLLLNFYRAGTLIGSVSVPVTNNWETHTLVVDRWDSVELLVGIGGTVAVDFLRAESYGGLPTRRTLTGVGI
Ga0308417_10215075F050402N/AMFSQLPTTRKGTIAERYVRDVLVNSGWHIYTYSADQSHPVDMLAITSDGGLVAVEVKCKCARIYYPDTGIDRNDYYAYHNLQSQLNLPVLLLFVDSYTKTVYGNYLDYLSQPLTIIDNQRELVYPMIVERYVYFALQSMEHYADIPPAIVAQLNTRTHSKYHHPLPTTADCDGV
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