NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308417_1022913

Scaffold Ga0308417_1022913


Overview

Basic Information
Taxon OID3300031950 Open in IMG/M
Scaffold IDGa0308417_1022913 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS65
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3057
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002970Metagenome / Metatranscriptome517N
F004791Metagenome / Metatranscriptome423Y
F005302Metagenome / Metatranscriptome405Y
F067304Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0308417_10229133F002970GGAGMSYSSVTDIIELLAGLAVQYNSAVVPVQRLATQANWSDAAQLPVRIIPVLGGLRLVEGGVYTPTRATRAVWEIDDVLLVRDVGMGRGVADTATALTDYIEDYVARLRFAWLARGDVQLVNVSGMIDVIRYGERAYEGVTTTTRFAHLIRAPSV
Ga0308417_10229134F005302AGGAGGMSHSGVVAGLYAGRFAVEISSNLTAWTAVSSATVKIDDVELTRPSGEAFVGGSSDYATLTIGKYQPVDITLTFLYNETAGSATNIILDRIQLPASSLAVRWSPRGLVGSAKAYGTSNDGGTSFGLGVVTGVTLSTLDPDEPEPYVAMVTVRTPWVRQYVLATSPTDLSPSSP
Ga0308417_10229135F004791AGGAGGMTPAEIYDIDAIRVDRSALTIREAATVLNNELTAPVVAQLVRKAIGSQADQFPLRTLKRVYERVLPKVFEPDEAVQSRVEGLTPNVTTITLGEYHEFLDASERKIAFPPVAATLLIKAYGEDILNEPYAAAALLLKKIFDAVGDEGNE
Ga0308417_10229136F067304N/AMLRYNRLMPPLRAQRREVLCDALKRQSVKRVGWAVVDVSAQYQFGVRGGQRREIEQT
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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