NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308417_1026939

Scaffold Ga0308417_1026939


Overview

Basic Information
Taxon OID3300031950 Open in IMG/M
Scaffold IDGa0308417_1026939 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS65
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2733
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002372Metagenome / Metatranscriptome566Y
F002795Metagenome / Metatranscriptome529Y
F008135Metagenome / Metatranscriptome338Y
F063723Metagenome / Metatranscriptome129N

Sequences

Protein IDFamilyRBSSequence
Ga0308417_10269392F002372AGGAGMPTRREDALWSVVHRRASHLRALLDALDDVDMSIAYELHYYPYAIVELLRVRDDAPPVVLRSAYVSANRQWERHSEFTLRVVEAALQLVHEYRADPSAGGSDSWA
Ga0308417_10269393F002795AGGAGGMATSGLVLRGMVAAYREFVSRKDGRLFRIVTVFGDLVVGEVVLCAVDGYDVFVDTPGYARGEMVELPARLQFVRDASGRPAVRLYVDEGVR
Ga0308417_10269394F008135N/AMRAVNDPRTERLLVSAGTSIARVLDARQRHAVVLAIEVCWYIVAALPPDEDMTCRDVVRLLRWFRNGFQEDGQEDGQEDGDGD
Ga0308417_10269396F063723N/ASEAARCLTRDMILWGKRGVICVYTSPSFATVDVRLRRLTQYVYVTAGRFRRSGVDYAVYRWHEHPYADDVLVERYRFALRLDTWYGIYDTLYGAAAGDTLAILPAPAPAPALAPARRRG
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