NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308417_1032224

Scaffold Ga0308417_1032224


Overview

Basic Information
Taxon OID3300031950 Open in IMG/M
Scaffold IDGa0308417_1032224 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS65
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2398
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F000855Metagenome / Metatranscriptome859Y
F001381Metagenome / Metatranscriptome709Y
F002978Metagenome / Metatranscriptome516Y
F004024Metagenome / Metatranscriptome456N

Sequences

Protein IDFamilyRBSSequence
Ga0308417_10322242F000855GAGGMDWLEDFWSKIVSWFDELSAGVHNGVIGWVNSLVEIWNGWMDALLHPAQAMPSIPALRWIVDWLGDIADYTRLMYMLVDYVAYASVVQQALLAQLAIVTVGLAFRAWLVIRRVVLVS
Ga0308417_10322243F001381GAGMQYVVATLYVLVWLALAAAAALWLPRWALPAALVQLAVAYVMLRAVWLTAAAGGDD
Ga0308417_10322244F000642GAGGVQEISIALALCAVGAAVWYMRRRDAGAGRVRGWLLLHDDLGGWRALPAVYADSGVVADGVTYPASLPVLRAGRELVWIARCESAALIEHQALERAREAAALASLWRGGGQWLDLLRVLGVVLPAVFAYFTWAQVSALQSLVAQILALVGER
Ga0308417_10322245F002978N/AVTLKSWADRRLWFIQARCGGRVVWGVVYDAADPESVSLARRAVATLRAAGADCSALPSPLPGTPDAPGA
Ga0308417_10322246F004024GAGGMHSERDYLRQPSSLSDDDMMFLDARATLAAALSRAVVGYSDSRVRALAWLSIATPRLYDRIAPVIESSAIRQSPGASRTLRDALRALSLEEFVRRRDERRSDR
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