NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0308417_1040254

Scaffold Ga0308417_1040254


Overview

Basic Information
Taxon OID3300031950 Open in IMG/M
Scaffold IDGa0308417_1040254 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS65
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2039
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008994Metagenome / Metatranscriptome324N
F040512Metagenome / Metatranscriptome161N
F076974Metagenome / Metatranscriptome117N
F083843Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0308417_10402541F083843N/ATRMSETVFHNLTPNPIVFPNLALVTLQPPNTTTGTIDSAAFTNPRSCFSVYPKGGMLGILQHSFNQNNSTSIAIASISNLRDFSSQIDNYNTPGITGTPLTGHAWRNQTVRSTGFTSDRIIDLGVSIAPASTTTYNRQLSVQGPTNFYYVTIEDWFASFIIIAL
Ga0308417_10402542F008994GAGGMRVTRFAIDENGRALFPDYFIVDDNTRLALAMYSANINVQSIVDEGLAQTPWLFTQWPGRTVSFDEWRNAFATNGYSFSQYHAQIGERVRLSELVDINRAFVELFMNGVNLNDPLDAETHRQLLTERNVDLVDFLK
Ga0308417_10402544F040512GAGMFDLLANVTVAGLSVVSARALEQYNWFQRLAPETKRLIAVAIAAFIALAMHMIGVIAQNAEPQSVKAAFSTALAIVIQQVYHALAKEDAQ
Ga0308417_10402545F076974AGGMDHVKRRRGRPRKPAALEIDEFFAVLELLVENAKRHHMLESILVTDGKLRVAFCVPLFGVTERLLSPKRDRPAELQSPTQLRMPL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.