NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308417_1099036

Scaffold Ga0308417_1099036


Overview

Basic Information
Taxon OID3300031950 Open in IMG/M
Scaffold IDGa0308417_1099036 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS65
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1041
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005302Metagenome / Metatranscriptome405Y
F056643Metagenome / Metatranscriptome137N
F064295Metagenome / Metatranscriptome128N

Sequences

Protein IDFamilyRBSSequence
Ga0308417_10990361F064295AGGAGGMTTPAEIYDIDAIRVDRAALTIREAATVLNNELTAPVVARLVRKAIGSQADQFPLRTLKRVYERVLPK
Ga0308417_10990362F005302AGGAGMSHSGVVAGLYAGDFAVEISTNLTTWTAVSSMMVKVDDVELSRPSGEAFVGGSSDHATITVGKCEPVEITLTFLYFEAANSASNIVYNQFESADPLLAVRWSPRGLIGGARGYGTSNDGGTTFGLGVITSLTLSAIDPSDAEPYVGMATVRTPSLRRYFLVANPTDLTPL
Ga0308417_10990363F056643N/ARLVEGGVYTPTRATRAVWEVDDLLLVRDVGMGRGVADTATALTDYIEDYVARLRFAWLARGDVQLVNVSGIIDVVRYGERAYEGVAMTTRFAHLIRAPST
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