NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315904_10005268

Scaffold Ga0315904_10005268


Overview

Basic Information
Taxon OID3300031951 Open in IMG/M
Scaffold IDGa0315904_10005268 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18016
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (73.47%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000473Metagenome / Metatranscriptome1097Y
F000671Metagenome / Metatranscriptome945Y
F095358Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0315904_1000526810F000473N/AMSNLSDKNYFKHGINLWTGEPNKPVFYNEEMKKKLREIKRPMLLLMDVVKYPEFLALRLYEDNFIQFTGSKKEEVIDYVMKVKKMIESYGVRCELEGVPSGKQIT
Ga0315904_1000526812F000671AGGAGMEKILCYSCNKTKNKLNVRRSVLLPINLFLCQTCIDQKLEPRWVILIAGRQNGHDSVKEFVQKKRYLGLDITAAELLV
Ga0315904_1000526849F095358N/AQIFDKFWEDVDTLGFTMDDGGEILEECVRDWMRENNFLVSLDEDGWLDD
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