NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315904_10005853

Scaffold Ga0315904_10005853


Overview

Basic Information
Taxon OID3300031951 Open in IMG/M
Scaffold IDGa0315904_10005853 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16953
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (76.92%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014144Metagenome / Metatranscriptome265Y
F027449Metagenome / Metatranscriptome194Y
F052590Metagenome / Metatranscriptome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0315904_1000585313F052590AGGAGMIITSLEKMEKIVAKNKELSWVGWDVRDLKRSDAGRTAINGVRVDGVWYLQRIYQVNRNGWDIPNKYRG
Ga0315904_1000585315F027449GGAGMYTDKMRMAFHSIPAPKNFGVSLIDNETFLTIKLDERSFVRMTHDEKLEAVKYVSMVKKALEMEGAIVLVTREPLR
Ga0315904_1000585328F014144N/AMEKGRVVICDICNKEIEVRNNVFAHETLSRHLKEHKNG
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