NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315904_10030442

Scaffold Ga0315904_10030442


Overview

Basic Information
Taxon OID3300031951 Open in IMG/M
Scaffold IDGa0315904_10030442 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6304
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006069Metagenome / Metatranscriptome382Y
F062458Metagenome / Metatranscriptome130N

Sequences

Protein IDFamilyRBSSequence
Ga0315904_100304424F062458N/AMGTRKITSFISSENRQANEAIYNFSVDYPDGILTCRDNETMELNVLSFDMPNTMYNINSTNDHFQITLDNADNRSIHLKHGNYSVKTLLKEFQDIFSQNVIPETSILHTFFGTYADALTIECVYNDTTNTYTFKKVIDLPLGITLPIAFSLYFKPINCGALLGMENDLEHEITANGMNTGLVNLIDYNKIIVHTENISYYYSNIENLSTISNRQFLSNIIFWKSKADVPPYQLIKYNNEDGGNSFVYKIENKEINSLVLQLRNERGEFLKDAPNYIIVIQYIFNERDDTNKLLKSIDYTIRQIYDAFLFAMQRLRLLL
Ga0315904_100304427F006069N/AMIIEKKLEGFNNKLVYDKLNYAQCSCRKCFQFYFNSLHIGARQSGKTYSVIQMIKHYENNKIMRDGVEYKLRTHLISPTIQANQIYQSLESLDMKKDAHDDYSDELLLDILDDIKAEKKKYDKYLLYKKYYDKFNKTPENKLDKLYDEEPEIFYMLEEYDYQNPKDIKHEPPKVNIIILDDLLGSDAFTKKTKSVLTNAMIKNRHMGVCFALLVQSIKAVPKNIRLNCSVFQLASFKNKKVILEDIYDEVSNVIGIDQFEELYDHATKKPYGSLIIDTTNGKRFLSNLDSELFIGNKISANNKDDDNSRSKK
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