NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0315904_10079930

Scaffold Ga0315904_10079930


Overview

Basic Information
Taxon OID3300031951 Open in IMG/M
Scaffold IDGa0315904_10079930 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3505
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013758Metagenome268Y
F021733Metagenome / Metatranscriptome217Y

Sequences

Protein IDFamilyRBSSequence
Ga0315904_100799301F021733N/ATGAVFAFDAFPEFPTAGGAGTDAQTVDFTFKVSKGAVTETFS
Ga0315904_100799305F013758N/AMTAYTPAYKVLIDGLEATDVTIANLVITSGRTDINTQPLAGYCQLQLMNLDNSSYDFTVGTGLAVEVTNSVGAYVPIFGGYISDFTIGVNRAGNIGYTTVATITALGALSKLPRIIDAGVLSQDQDGDQIYTLLSGYLLGQWNEVPAAQTWANYDPTETWNDAVNLGLGEIDRPGDYTLIARSSNNTDLYSLCADIANSAFGVIYEDSNGNIGYADQTHRQDYLAANGYTTLDANHANGLGLSATTRAGDLRNSFTINYDNNANQTYTATDPISQSLYGVYAEEFTSRIKHTADAEALADRYIELRANPYPKFQSITFVLGNPEIDDSDRDALINIFIGQPVWIQNLPGNITNGEFQGYIEGWTFRASLNNLSVTFNASPINFSQVAVKWEQVNAAETW
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.