NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315904_10089547

Scaffold Ga0315904_10089547


Overview

Basic Information
Taxon OID3300031951 Open in IMG/M
Scaffold IDGa0315904_10089547 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3266
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F001106Metagenome / Metatranscriptome776Y
F001900Metagenome / Metatranscriptome620Y

Sequences

Protein IDFamilyRBSSequence
Ga0315904_100895472F001106AGGAGMSFETLKVSELKKIAEDFAVDTDGLKNKADIIAALAEEGVTWSVYNKTMDKMEEEDMSVEVLPKFDPKAEQPENTVLVRMTRDNFRYDIMGFTFTKEHPFIAMSNEAAQAIFDKEEGFRLATPREVQEYYN
Ga0315904_100895475F001900GGAGLDNSGLLVQASSGLERMMYSNQSGPLKDSTVAQVSAFIYYEAAVISKLTTNNQFKALFTKTMFDQINTDFGNYIDALARSKPKSLHHVYEWKKTGNKTARLFKLNKISEDGLSFKVNYEFTPSRSMVPAATGRRRHMFANKASIMEEGKPLVIRPKNAERLVFEIDGETVFMPKGKSVTVRRPGGSASTNQFTLAHSRFFSGRLVNESIKKSGFQKVFNSRITKALGVPSNIKKVQYSFSPNLIRSQADAALTASFGGAM
Ga0315904_100895476F000258GGAGGVTANYKLDAMLELRKYLWKELYTRNIFDEEEYWSDNLNENIVPIIPVQQAAEMNQFLSGKKHIVYDKVGMSYEDNWLICCEQIMFTLYSTSVADINEIRNYMTDEFRRMDESAKDINKWADLSDKFKFHSIWIADISPTAPSEELQGFFSAEVILE
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